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v1.0

Organism name:
Batrachochytrium dendrobatidis JAM81 (chytrids)
Infraspecific name:
Strain: JAM81
BioSample:
SAMN02746048
BioProject:
PRJNA41157
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2011/04/12
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000203795.1 (latest)
RefSeq assembly accession:
GCF_000203795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADAR01
Assembly method:
ARACHNE v. 20070201
Genome coverage:
8.74x
Sequencing technology:
Sanger

IDs: 266258 [UID] 266258 [GenBank] 895298 [RefSeq]

See Genome Information for Batrachochytrium dendrobatidis

There are 3 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://genome.jgi-psf.org/Batde5
JGI Project ID: 4001669
The strain JAM81 was provided by Jessica Morgan, Animal Research Institute, Moorooka, Australia (jessica.morgan@dpi.qld.gov.au)
The DNA was provided by Erica Rosenblum, University of Idaho, Moscow, ID (rosenblum@uidaho.edu)
Contacts: Igor Grigoriev, DOE Joint Genome Institute (ivgrigoriev@lbl.gov)
 Jason ... Stajich (jason.stajich@ucr.edu)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length24,315,081
Total ungapped length24,130,314
Gaps between scaffolds0
Number of scaffolds127
Scaffold N501,484,462
Scaffold L506
Number of contigs510
Contig N50318,114
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)510

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced24,315,08112724,130,3141,484,4623830
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