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ASM19661v1

Organism name:
Erwinia billingiae Eb661 (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Eb661
BioSample:
SAMEA2272131
BioProject:
PRJEA34781
Submitter:
Max Planck Society
Date:
2010/06/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000196615.1 (latest)
RefSeq assembly accession:
GCF_000196615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 265038 [UID] 257438 [GenBank] 265038 [RefSeq]

See Genome Information for Erwinia billingiae

There are 12 assemblies for this organism

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History (Show revision history)

Comment

This project was carried out by
*Max Planck Institute for Molecular Genetics, Berlin, Germany 
 (principle investigator);
-------------- Genome Center
 Center: Max Planck Institute for Molecular Genetics 
 Center code: MPIMG
--------------
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline ... (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 01:29:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,985
CDSs (total)::4,880
Genes (coding)::4,821
CDSs (with protein)::4,821
Genes (RNA)::105
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::77
ncRNAs::7
Pseudo Genes (total)::59
CDSs (without protein)::59
Pseudo Genes (ambiguous residues)::0 of 59
Pseudo Genes (frameshifted)::28 of 59
Pseudo Genes (incomplete)::31 of 59
Pseudo Genes (internal stop)::15 of 59
Pseudo Genes (multiple problems)::13 of 59
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,372,268
Total ungapped length5,372,268
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000196625.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome FP236843.1=NC_014306.1
Plasmid pEB102FP236826.1=NC_014304.1
Plasmid pEB170FP236830.1=NC_014305.1

Assembly statistics

MoleculeTotal
Length
All5,372,268
Chromosome 5,100,167
Plasmid pEB102102,323
Plasmid pEB170169,778

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Erwinia billingiae Eb661Erwinia billingiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024169515.1Erwinia aphidicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.7829.8832.57

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna