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BIMP_2.0

This assembly has been updated. See current version

Anomalous assembly.

Organism name:

Bombus impatiens (common eastern bumble bee)

Sex:

male

BioSample:

SAMN02953787

BioProject:

PRJNA61101

Submitter:

Biotechnology Center, University of Illinois (BCUI)

Date:

2011/09/22

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated

GenBank assembly accession:

GCA_000188095.2 (replaced)

RefSeq assembly accession:

GCF_000188095.1 (replaced)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

AEQM02

Assembly method:

SOAPdenovo v. 1.05

Genome coverage:

127x

Sequencing technology:

Illumina GAIIx

IDs: 306078 [UID] 304348 [GenBank] 306078 [RefSeq]

See Genome Information for Bombus impatiens

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000188095.4	=	GCF_000188095.3	BIMP_2.2	Scaffold	Latest GenBank, Latest RefSeq
GCA_000188095.3	=	GCF_000188095.2	BIMP_2.1	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000188095.2	=	GCF_000188095.1	BIMP_2.0	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000188095.1	n/a	n/a	BIMP_1.0	Scaffold	Replaced GenBank

Comment

In March 2018 138 contigs and 21 scaffolds were suppressed because they were bacterial contaminants. As a result, the assembly was updated to BIMP_2.1 (GCA_000188095.3)

Global statistics

Total sequence length	249,185,056
Total ungapped length	244,287,529
Gaps between scaffolds	0
Number of scaffolds	5,559
Scaffold N50	1,399,493
Scaffold L50	54
Number of contigs	16,215
Contig N50	58,885
Contig L50	1,140
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	16,215

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BIMP_2.0

See Genome Information for Bombus impatiens

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