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Si_gnG

Organism name:
Solenopsis invicta (red fire ant)
Sex:
male
BioSample:
SAMN02953778
BioProject:
PRJNA49629
Submitter:
University of Lausanne
Date:
2011/02/08
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000188075.1 (replaced)
RefSeq assembly accession:
GCF_000188075.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AEAQ01
Assembly method:
SOAPdenovo v. 1.04; Newbler v. 2.3
Genome coverage:
15x 454; 30x Illumina
Sequencing technology:
454; Illumina

IDs: 244018 [UID] 244018 [GenBank] 1502618 [RefSeq]

See Genome Information for Solenopsis invicta

History (Show revision history)

Comment

A 454 shotgun sequencing library and an Illumina 330bp-insert paired-end library were built from the DNA of the single focal haploid male. These libraries made up 93.8% of our sequencing effort. The focal male had the Gp-9 B genotype. ... He was the son of a queen from a multiple-queen colony originally collected near Athens, Georgia, USA in 2008. Upon transfer of the colony to the laboratory, the queen had been isolated with workers for one year to ensure that all progeny in the colony were hers. To permit bridging of repeats that could be longer than the 454 read length, we additionally constructed 8kb and 20kb-insert paired-end 454 libraries for the remaining 6.2% of sequencing effort. The 8kb and 20kb libraries were respectively constructed from DNA pooled from ten and thirty-one brothers of the focal male, all having the Gp-9 B genotype.  more

Global statistics

Total sequence length396,024,718
Total ungapped length354,744,922
Gaps between scaffolds0
Number of scaffolds69,511
Scaffold N50558,018
Scaffold L50139
Number of contigs90,219
Contig N5014,677
Contig L505,821
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)90,218

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced396,009,16969,510354,729,373558,01820,7080
MoleculeTotal
Length
Mitochondrion MT15,549
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