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IDs: 275968 [UID] 240978 [GenBank] 275968 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4089449 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::05/02/2023 01:24:21Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::1,418CDSs (total)::1,367Genes (coding)::1,364CDSs (with protein)::1,364Genes (RNA)::51rRNAs::1, 1, 1 (5S, 16S, 23S)complete rRNAs::1, 1, 1 (5S, 16S, 23S)tRNAs::46ncRNAs::2Pseudo Genes (total)::3CDSs (without protein)::3Pseudo Genes (ambiguous residues)::0 of 3Pseudo Genes (frameshifted)::0 of 3Pseudo Genes (incomplete)::3 of 3Pseudo Genes (internal stop)::0 of 3CRISPR Arrays::3##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Desulfurococcus mucosus 07, DSM 2162collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::Icelandenvironment::Fresh water, Sulfur springnum_replicons::1ref_biomaterial::DSM 2162, ATCC 35584, JCM 9187biotic_relationship::Free livingtrophic_level::Organotrophrel_to_oxygen::Anaerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi02914Type Strain::YesFunding Program::DOE-GEBA 2007Gene Calling Method::Prodigal 1.4, GenePRIMPIsolation Site::Hot solfataric spring; IcelandCell Shape::Coccus-shapedMotility::MotileTemperature Range::HyperthermophileTemperature Optimum::85CGram Staining::Gram-Diseases::None##MIGS-Data-END##
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