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HsapALLPATHS1

Organism name:
Homo sapiens (human)
Sex:
female
BioSample:
SAMN02981291
BioProject:
PRJNA59877
Submitter:
Broad Institute
Date:
2011/01/06
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000185165.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AEKP01
Assembly method:
ALLPATHS-LG v. 34731
Genome coverage:
103.1x
Sequencing technology:
Illumina GAII; Illumina HiSeq

IDs: 238948 [UID] 238948 [GenBank]

See Genome Information for Homo sapiens

There are 222 assemblies for this organism

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History (Show revision history)

Comment

This genome of human was de novo assembled using the ALLPATHS-LG assembler from Illumina sequence data, and is in support of the paper "High quality draft assemblies of mammalian genomes from massively parallel sequence data" published in the Proceedings ... of the National Academy of Sciences.  more

Global statistics

Total sequence length2,786,258,565
Total ungapped length2,614,905,438
Gaps between scaffolds0
Number of scaffolds11,393
Scaffold N5012,084,118
Scaffold L5067
Number of contigs231,194
Contig N5023,924
Contig L5030,971
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)231,194

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,786,258,56511,3932,614,905,43812,084,118219,8010
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