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MmusALLPATHS2

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: C57BL/6J
Sex:
female
BioSample:
SAMN02981292
BioProject:
PRJNA59879
Submitter:
Broad Institute
Date:
2012/08/29
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000185105.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AEKQ02
Assembly method:
Allpaths v. 40349
Genome coverage:
85x
Sequencing technology:
Illumina GAII; Illumina HiSeq

IDs: 419498 [UID] 419498 [GenBank]

See Genome Information for Mus musculus

There are 24 assemblies for this organism

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History (Show revision history)

Comment

The 01 versions of WGS projects AEKQ00000000 and AEKR00000000 are assembled from the same sequence reads using different methodologies. The AEKQ00000000 contigs were assembled with ALLPATHS-LG v. 34731, and the AEKR00000000 contigs were assembled with SOAPdenovo v. 1.05. They ... are reported in Gnerre et al. 2011, PNAS.
This 02 version of AEKQ00000000 was de novo assembled using the ALLPATHS-LG assembler from Illumina sequence data, in support of the paper by Williams et al. 2012 Genome Res. The 01 version, AEKQ01000000 can be still retrieved in Entrez Assembly by a search for its accession prefix plus version, AEKQ01, or its assembly name, MmusALLPATHS1.  more

Global statistics

Total sequence length2,505,015,129
Total assembly gap length225,956,751
Gaps between scaffolds0
Number of scaffolds2,314
Scaffold N5018,924,318
Scaffold L5040
Number of contigs191,581
Contig N5019,501
Contig L5035,205
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)191,581

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,505,015,1292,3142,279,058,37818,924,318189,2670
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