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IDs: 275688 [UID] 236518 [GenBank] 275688 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4087653 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::05/02/2023 01:48:21Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,871CDSs (total)::2,809Genes (coding)::2,799CDSs (with protein)::2,799Genes (RNA)::62rRNAs::3, 3, 3 (5S, 16S, 23S)complete rRNAs::3, 3, 3 (5S, 16S, 23S)tRNAs::49ncRNAs::4Pseudo Genes (total)::10CDSs (without protein)::10Pseudo Genes (ambiguous residues)::0 of 10Pseudo Genes (frameshifted)::3 of 10Pseudo Genes (incomplete)::7 of 10Pseudo Genes (internal stop)::1 of 10Pseudo Genes (multiple problems)::1 of 10##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Sulfuricurvum kujiense YK-1, DSM 16994collection_date::Missinglat_lon::40.190524 141.775583depth::Missingalt_elev::Missingcountry::Japanenvironment::Missingnum_replicons::5ref_biomaterial::DSM 16994, ATCC BAA-921biotic_relationship::Free livingtrophic_level::Chemolithoautotrophrel_to_oxygen::Anaerobeisol_growth_condt::15545474sequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi05071Type Strain::YesFunding Program::DOE-GEBA 2009Isolation Site::Drain water from an underground crude-oil storage cavity; Japan, Kuji, IwateCell Shape::Rod-shapedMotility::MotileSporulation::NonsporulatingTemperature Range::MesophileTemperature Optimum::25CpH::7.0##MIGS-Data-END##
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