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ASM18366v1

Organism name:
Candidatus Liberibacter solanacearum CLso-ZC1 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CLso-ZC1
BioSample:
SAMN02604277
BioProject:
PRJNA39273
Submitter:
USDA, ARS
Date:
2010/12/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000183665.1 (latest)
RefSeq assembly accession:
GCF_000183665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 275668 [UID] 236438 [GenBank] 275668 [RefSeq]

See Genome Information for Candidatus Liberibacter solanacearum

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/11/2022 14:05:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,155
CDSs (total)::1,098
Genes (coding)::1,069
CDSs (with protein)::1,069
Genes (RNA)::57
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::29
CDSs (without protein)::29
Pseudo Genes (ambiguous residues)::0 of 29
Pseudo Genes (frameshifted)::21 of 29
Pseudo Genes (incomplete)::11 of 29
Pseudo Genes (internal stop)::2 of 29
Pseudo Genes (multiple problems)::5 of 29
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,258,278
Total ungapped length1,258,278
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000183675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002371.1=NC_014774.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,258,278

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Liberibacter solanacearum CLso-ZC1Candidatus Liberibacter solanacearum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.8421.7922.29

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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