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ASM18328v1

Organism name:
Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: JF99
BioSample:
SAMN02604267
BioProject:
PRJNA43509
Submitter:
University of York
Date:
2010/11/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000183285.1 (latest)
RefSeq assembly accession:
GCF_000183285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 370398 [UID] 232348 [GenBank] 370398 [RefSeq]

See Genome Information for Buchnera aphidicola

There are 90 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/01/2022 00:37:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::621
CDSs (total)::584
Genes (coding)::566
CDSs (with protein)::566
Genes (RNA)::37
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::18
CDSs (without protein)::18
Pseudo Genes (ambiguous residues)::0 of 18
Pseudo Genes (frameshifted)::14 of 18
Pseudo Genes (incomplete)::3 of 18
Pseudo Genes (internal stop)::2 of 18
Pseudo Genes (multiple problems)::1 of 18
##Genome-Annotation-Data-END##

Global statistics

Total sequence length641,716
Total ungapped length641,716
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000183295.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002302.1=NC_017253.1

Assembly statistics

MoleculeTotal
Length
Chromosome 641,716

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)Buchnera aphidicola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007365.1Buchnera aphidicola str. Sg (Schizaphis graminum)suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000007365.1Buchnera aphidicolasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type80.2832.7132.73
Best-match type80.2832.7132.73

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna
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