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ASM18137v1

Organism name:
Tupaia belangeri (northern tree shrew)
Sex:
female
BioSample:
SAMN03004381
BioProject:
PRJNA13971
Submitter:
Broad Institute
Date:
2006/06/08
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000181375.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AAPY01

IDs: 229078 [UID] 229078 [GenBank]

See Genome Information for Tupaia belangeri

History (Show revision history)

Comment

This version of the project represents approximately 2x coverage of the genome. Some bases are marked as zero quality to reflect high-quality base mismatches in the assembled reads. Such mismatch may be due to allelic differences within the sequenced ... individual or low frequency duplicated sequences in the species. At the low coverage level (2x) of this assembly, these two causes are not distinguishable.  more

Global statistics

Total sequence length2,137,225,476
Total ungapped length2,137,225,476
Number of contigs841,006
Contig N502,974
Contig L50194,504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)841,006

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,137,225,476841,0062,137,225,4762,97400
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