U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM17933v1

Organism name:
Peptoniphilus sp. oral taxon 836 str. F0141 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: F0141
BioSample:
SAMN00031762
BioProject:
PRJNA49437
Submitter:
J. Craig Venter Institute
Date:
2010/07/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000179335.1 (latest)
RefSeq assembly accession:
GCF_000179335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AEAA01
Assembly method:
Newbler v. 2.3
Genome coverage:
18x
Sequencing technology:
454

IDs: 226358 [UID] 226338 [GenBank] 226358 [RefSeq]

See Genome Information for Peptoniphilus sp. oral taxon 836

Pathogen Detection Resources

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC
Product names were updated in June 2013

Global statistics

Total sequence length1,625,156
Total ungapped length1,625,156
Number of contigs145
Contig N5051,646
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)145

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,625,1561451,625,15651,64600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Peptoniphilus sp. oral taxon 836 str. F0141Peptoniphilus sp. oral taxon 836

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000378725.1Peptoniphilus lacrimalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.3291.2580.20

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna