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ASM16847v1

Organism name:
Listeria monocytogenes FSL J2-071 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: FSL J2-071
BioSample:
SAMN02415202
BioProject:
PRJNA17307
Submitter:
Broad Institute
Date:
2010/03/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_000168475.1 (latest)
RefSeq assembly accession:
GCF_000168475.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AARN04

IDs: 205438 [UID] 205418 [GenBank] 205438 [RefSeq]

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60478 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,853,713
Total ungapped length2,853,713
Number of contigs53
Contig N50102,729
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)53

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,853,713532,853,713102,72900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Listeria monocytogenes FSL J2-071Listeria monocytogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013625995.1Listeria monocytogenescladeref

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013625995.1Listeria monocytogenescladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2396.8797.92
Best-match type99.2396.8797.92

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna