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ASM16145v1

Organism name:
Bacillus pseudomycoides DSM 12442 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 12442
BioSample:
SAMN00727631
BioProject:
PRJNA29707
Submitter:
Naval Medical Research Center
Date:
2009/05/29
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000161455.1 (latest)
RefSeq assembly accession:
GCF_000161455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACMX01

IDs: 193678 [UID] 193658 [GenBank] 193678 [RefSeq]

See Genome Information for Bacillus pseudomycoides

Pathogen Detection Resources

There are 120 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from BDRD
Genome Coverage: 8.5X
Sequencing Technology: 454

Global statistics

Total sequence length5,782,514
Total ungapped length5,752,014
Gaps between scaffolds0
Number of scaffolds1
Scaffold N505,782,514
Scaffold L501
Number of contigs305
Contig N5072,236
Contig L5023
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)305

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000161465.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CM000745.1=NZ_CM000745.1

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Chromosome 5,782,51415,752,0145,782,5143050

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus pseudomycoides DSM 12442Bacillus pseudomycoides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000299035.1Bacillus bingmayongensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.2264.3867.68

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected