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ASM15803v1

Organism name:
Bacteroides cellulosilyticus DSM 14838 (CFB group bacteria)
Infraspecific name:
Strain: DSM 14838
BioSample:
SAMN00008759
Submitter:
Washington University Genome Sequencing Center
Date:
2009/02/09
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000158035.1 (latest)
RefSeq assembly accession:
GCF_000158035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACCH01

IDs: 186978 [UID] 186958 [GenBank] 186978 [RefSeq]

See Genome Information for Bacteroides cellulosilyticus

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Bacteroides cellulosilyticus (GenBank Accession Number for 16S rDNA gene: AJ583243) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und ... Zellkulturen GmbH (DSMZ) (DSM 14838).

This is a Newbler assembly (http://www.454.com/enabling-technology/the-software.asp) comprised of one full plate FLX PE 454 Data with a Q20 coverage of 16.3X.

This sequenced strain is part of a comprehensive, sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine, the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled "Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)" (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf). These studies are supported by National Human Genome Research Institute.

Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) datab  more

Global statistics

Total sequence length6,870,144
Total assembly gap length143,876
Gaps between scaffolds0
Number of scaffolds66
Scaffold N501,482,497
Scaffold L502
Number of contigs525
Contig N5023,489
Contig L5085
Total number of chromosomes and plasmids0

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,870,144666,726,2681,482,4974590
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