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ASM15549v1

Organism name:
Helicobacter pullorum MIT 98-5489 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MIT 98-5489
BioSample:
SAMN02463681
BioProject:
PRJNA30075
Submitter:
Broad Institute
Date:
2008/08/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000155495.1 (latest)
RefSeq assembly accession:
GCF_000155495.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ABQU01

IDs: 181918 [UID] 181898 [GenBank] 181918 [RefSeq]

See Genome Information for Helicobacter pullorum

There are 30 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project.
This project is co-owned with the Human Microbiome Project DACC.
Genome Coverage: 60X
Sequencing Technology: 454
Annotation was added to the scaffolds in June 2009
Product names were updated in June 2013

Global statistics

Total sequence length1,951,667
Total ungapped length1,919,070
Gaps between scaffolds0
Number of scaffolds44
Scaffold N50277,479
Scaffold L503
Number of contigs131
Contig N5042,907
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)131

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,951,667441,919,070277,479870

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Helicobacter pullorum MIT 98-5489Helicobacter pullorum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017979475.1Helicobacter pullorum NCTC 12824type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017979475.1Helicobacter pullorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1879.1188.90
Best-match type98.1879.1188.90

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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