Format

Download Assemblies

Send to:

Choose Destination

ASM14675v1

Organism name:
Streptococcus sp. oral taxon 071 str. 73H25AP (firmicutes)
Infraspecific name:
Strain: 73H25AP
BioSample:
SAMN00260141
Submitter:
Baylor College of Medicine
Date:
2010/09/03
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000146755.1 (latest)
RefSeq assembly accession:
GCF_000146755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AEEP01
Assembly method:
Newbler Assembler v. v2.3-10192009
Genome coverage:
68.3x
Sequencing technology:
454

IDs: 233958 [UID] 169698 [GenBank] 233958 [RefSeq]

See Genome Information for Streptococcus sp. oral taxon 071

History (Show revision history)

Comment

Streptococcus sp. oral taxon 071 str. 73H25AP

 Strain source, body site: Oral

 Inquiries should be directed to microbe@hgsc.bcm.tmc.edu

 This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. This ... sequence is generated as a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease. See http://www.hmpdacc.org/ for more information.

 The sequenced strain was provided by Izard, J. and Dewhirst, F. (Forsyth Institute, Department of Molecular Genetics, 140 The Fenway, Boston, MA, 02135). The genomic DNA was prepared from a single bacterial isolate. The sequence generated included at least 10 fold coverage of Roche/454 Lifesciences FLX fragment data and at least 8 fold clone coverage of Roche/454 Lifesciences paired-end data. The Roche/454 Lifesciences sequence was assembled using the Roche/454 Lifesciences Newbler assembler. This draft assembly meets the HMP draft quality standards (more than 90% of the genome is included in contigs, more than 90%  more

Global statistics

Total sequence length1,976,523
Total assembly gap length16,053
Gaps between scaffolds0
Number of scaffolds7
Scaffold N501,963,473
Scaffold L501
Number of contigs20
Contig N50285,087
Contig L503
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000146765.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome n/an/an/a7

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome AllAssembled moleculeUnlocalized scaffolds1,976,52301,976,5237071,960,47001,960,4701,963,47301,963,47313013000
Support Center