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IDs: 274598 [UID] 167158 [GenBank] 274598 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::05/02/2023 01:21:27Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,427CDSs (total)::2,341Genes (coding)::2,318CDSs (with protein)::2,318Genes (RNA)::86rRNAs::5, 5, 5 (5S, 16S, 23S)complete rRNAs::5, 5, 5 (5S, 16S, 23S)tRNAs::67ncRNAs::4Pseudo Genes (total)::23CDSs (without protein)::23Pseudo Genes (ambiguous residues)::0 of 23Pseudo Genes (frameshifted)::4 of 23Pseudo Genes (incomplete)::15 of 23Pseudo Genes (internal stop)::6 of 23Pseudo Genes (multiple problems)::2 of 23CRISPR Arrays::1##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Acetohalobium arabaticum Z-7288, DSM 5501collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::Russiaenvironment::Fresh waternum_replicons::1ref_biomaterial::DSM 5501, ATCC 49924biotic_relationship::Free livingtrophic_level::Chemolithotroph, Methylotroph, Organotrophrel_to_oxygen::Anaerobeisol_growth_condt::Missingsequencing_meth::454-FLX, 454-Titanium, Illuminaassembly::Newbler v. 2.0.00.20finishing_strategy::FinishedGOLD Stamp ID::Gi02906Type Strain::YesGreengenes ID::14306Funding Program::DOE-GEBA 2007Gene Calling Method::Prodigal, GenePRIMPIsolation Site::"Lagoons from East Crimea, Arabat spit, USSR"Temperature Range::MesophileTemperature Optimum::37CSalinity::HalophileGram Staining::Gram+Diseases::None##MIGS-Data-END##
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