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V1.0

Description:
Laccaria bicolor S238N-H82 assembly V1.0
Organism name:
Laccaria bicolor S238N-H82 (basidiomycetes)
Infraspecific name:
Strain: S238N-H82
BioSample:
SAMN02769624
Submitter:
Laccaria Genome Consortium
Date:
2008/01/11
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000143565.1 (latest)
RefSeq assembly accession:
GCF_000143565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ABFE01

IDs: 166168 [UID] 166148 [GenBank] 166168 [RefSeq]

See Genome Information for Laccaria bicolor

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov/Laccaria
JGI Project ID: 3634485
Source DNA is available from Francis Martin (fmartin@nancy.inra.fr)
Contacts: Francis Martin (fmartin@nancy.inra.fr)
 Igor Grigoriev (ivgrigoriev@lbl.gov)
Annotation done by JGI-PGF and the Laccaria bicolor Consortium 
The JGI and collaborators endorse the principles for the distribution and use ... of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
This version of the project, V1.0, represents 9.9x coverage of the genome.
Annotated scaffolds were added in January 2008.  more

Global statistics

Total sequence length64,877,444
Total assembly gap length6,194,114
Gaps between scaffolds0
Number of scaffolds665
Scaffold N50784,691
Scaffold L5021
Number of contigs4,401
Contig N5071,011
Contig L50181
Total number of chromosomes and plasmids0

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced64,877,44466558,683,330784,6913,7360
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