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Attacep1.0

Organism name:
Atta cephalotes (ants)
Sex:
male
BioSample:
SAMN02953774
BioProject:
PRJNA48091
Submitter:
Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine
Date:
2010/07/06
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000143395.2 (latest)
RefSeq assembly accession:
GCF_000143395.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
ADTU01
Assembly method:
454 GS De novo assembler software R&D v. 03/06/2010
Genome coverage:
18-20x
Sequencing technology:
454 Titanium including shotgun, 8-kbp and 20-kbp paired-end sequencing datasets

IDs: 200988 [UID] 200988 [GenBank] 1718418 [RefSeq]

See Genome Information for Atta cephalotes

History (Show revision history)

Global statistics

Total sequence length317,671,980
Total ungapped length281,103,936
Gaps between scaffolds0
Number of scaffolds2,835
Scaffold N505,154,485
Scaffold L5021
Number of contigs30,435
Contig N5014,798
Contig L505,573
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30,795

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced317,671,9802,835281,103,9365,154,48527,6000
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