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ASM9154v1

Organism name:
Thermus thermophilus HB8 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HB8
BioSample:
SAMD00061070
BioProject:
PRJNA13202
Submitter:
National Institute of Advanced Industrial Science and Technology, Japan
Date:
2004/11/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000091545.1 (latest)
RefSeq assembly accession:
GCF_000091545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 113978 [UID] 112178 [GenBank] 113978 [RefSeq]

See Genome Information for Thermus thermophilus

There are 31 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2022 01:54:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,280
CDSs (total)::2,223
Genes (coding)::2,176
CDSs (with protein)::2,176
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::47
CDSs (without protein)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::20 of 47
Pseudo Genes (incomplete)::25 of 47
Pseudo Genes (internal stop)::5 of 47
Pseudo Genes (multiple problems)::3 of 47
CRISPR Arrays::9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,116,056
Total ungapped length2,116,056
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000091555.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP008226.1=NC_006461.1
Plasmid pTT8AP008228.1=NC_006463.1
Plasmid pTT27AP008227.1=NC_006462.1

Assembly statistics

MoleculeTotal
Length
All2,116,056
Chromosome 1,849,742
Plasmid pTT89,322
Plasmid pTT27256,992

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermus thermophilus HB8Thermus thermophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019973715.1Thermus thermophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019973715.1Thermus thermophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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