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ASM4668v1

Organism name:
Bartonella quintana str. Toulouse (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Toulouse
BioSample:
SAMEA3138248
BioProject:
PRJNA44
Submitter:
Uppsala Univ.
Date:
2004/06/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000046685.1 (latest)
RefSeq assembly accession:
GCF_000046685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 65268 [UID] 353258 [GenBank] 65268 [RefSeq]

See Genome Information for Bartonella quintana

There are 25 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000046685.1-RS_2024_04_23
Annotation Date::04/23/2024 00:43:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,349
CDSs (total)::1,297
Genes (coding)::1,200
CDSs (with protein)::1,200
Genes (RNA)::52
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::97
CDSs (without protein)::97
Pseudo Genes (ambiguous residues)::0 of 97
Pseudo Genes (frameshifted)::80 of 97
Pseudo Genes (incomplete)::34 of 97
Pseudo Genes (internal stop)::55 of 97
Pseudo Genes (multiple problems)::65 of 97
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,581,384
Total ungapped length1,581,384
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000046695.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome BX897700.1=NC_005955.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,581,384

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bartonella quintana str. ToulouseBartonella quintana

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002735245.1Bartonella henselaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.9080.6165.19

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna