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ASM2624v1

Organism name:
Escherichia coli 55989 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 55989
BioSample:
SAMEA3138229
BioProject:
PRJNA33413
Submitter:
Institut Pasteur and Genoscope
Date:
2008/12/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000026245.1 (latest)
RefSeq assembly accession:
GCF_000026245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 45208 [UID] 27048 [GenBank] 45208 [RefSeq]

See Genome Information for Escherichia coli

There are 273468 assemblies for this organism

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History (Show revision history)

Comment

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MaGe annotation system
http://www.genoscope.cns.fr/agc/mage.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline ... (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/24/2023 01:25:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,044
CDSs (total)::4,919
Genes (coding)::4,694
CDSs (with protein)::4,694
Genes (RNA)::125
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::94
ncRNAs::9
Pseudo Genes (total)::225
CDSs (without protein)::225
Pseudo Genes (ambiguous residues)::0 of 225
Pseudo Genes (frameshifted)::82 of 225
Pseudo Genes (incomplete)::151 of 225
Pseudo Genes (internal stop)::43 of 225
Pseudo Genes (multiple problems)::47 of 225
Pseudo Genes (short protein)::2 of 225
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,154,862
Total ungapped length5,154,862
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000026255.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CU928145.2=NC_011748.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,154,862

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli 55989Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010385.1Escherichia coli SE11claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010385.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1187.2487.23
Best-match type99.1187.2487.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna