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Organism name:
Pseudomonas entomophila L48 (g-proteobacteria)
Taxonomy check:
Infraspecific name:
Strain: L48
Assembly type:
Assembly level:
Complete Genome
Genome representation:
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000026105.1 (latest)
RefSeq assembly accession:
GCF_000026105.1 (latest)
RefSeq assembly and GenBank assembly identical:

IDs: 45068 [UID] 26908 [GenBank] 45068 [RefSeq]

See Genome Information for Pseudomonas entomophila

There are 10 assemblies for this organism

See more

History (Show revision history)


Annotation data relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in EntomoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage.
Each annotation includes a confidence level as ... follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism
2b : Function of strongly homologous gene
3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology
4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS
7 : Gene remnant
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more


Annotation Provider::NCBI RefSeq
Annotation Date::03/19/2023 10:31:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,212
CDSs (total)::5,108
Genes (coding)::5,085
CDSs (with protein)::5,085
Genes (RNA)::104
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
Pseudo Genes (total)::23
CDSs (without protein)::23
Pseudo Genes (ambiguous residues)::0 of 23
Pseudo Genes (frameshifted)::4 of 23
Pseudo Genes (incomplete)::19 of 23
Pseudo Genes (internal stop)::4 of 23
Pseudo Genes (multiple problems)::4 of 23

Global statistics

Total sequence length5,888,780
Total ungapped length5,888,780
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000026115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CT573326.1=NC_008027.1

Assembly statistics

Chromosome 5,888,780

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas entomophila L48Pseudomonas entomophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014268935.2Pseudomonas peradeniyensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.7175.2074.84

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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