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ASM2516v1

Organism name:
Escherichia coli O55:H7 str. CB9615 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: CB9615
BioSample:
SAMN02603636
BioProject:
PRJNA42729
Submitter:
Nankai University
Date:
2010/03/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000025165.1 (latest)
RefSeq assembly accession:
GCF_000025165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 110028 [UID] 25968 [GenBank] 110028 [RefSeq]

See Genome Information for Escherichia coli

There are 274071 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 10:36:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,404
CDSs (total)::5,276
Genes (coding)::5,039
CDSs (with protein)::5,039
Genes (RNA)::128
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::99
ncRNAs::7
Pseudo Genes (total)::237
CDSs (without protein)::237
Pseudo Genes (ambiguous residues)::0 of 237
Pseudo Genes (frameshifted)::92 of 237
Pseudo Genes (incomplete)::127 of 237
Pseudo Genes (internal stop)::67 of 237
Pseudo Genes (multiple problems)::43 of 237
Pseudo Genes (short protein)::5 of 237
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,452,353
Total ungapped length5,452,353
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000025175.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001846.1=NC_013941.1
Plasmid pO55CP001847.1=NC_013942.1

Assembly statistics

MoleculeTotal
Length
All5,452,353
Chromosome 5,386,352
Plasmid pO5566,001

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli O55:H7 str. CB9615Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001281725.1Escherichia colicladeref

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001281725.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6090.5193.12
Best-match type99.6090.5193.12

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna