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ASM2266v1

Organism name:
Escherichia coli BL21(DE3) (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: BL21(DE3)
BioSample:
SAMN02603478
BioProject:
PRJNA20713
Submitter:
Korea Research Institute of Bioscience and Biotechnology
Date:
2010/05/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000022665.2 (latest)
RefSeq assembly accession:
GCF_000022665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 380598 [UID] 170118 [GenBank] 380598 [RefSeq]

See Genome Information for Escherichia coli

There are 270135 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from F. William Studier (studier@bnl.gov)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 05:05:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,445
CDSs (total)::4,329
Genes (coding)::4,141
CDSs (with protein)::4,141
Genes (RNA)::116
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::9
Pseudo Genes (total)::188
CDSs (without protein)::188
Pseudo Genes (ambiguous residues)::0 of 188
Pseudo Genes (frameshifted)::46 of 188
Pseudo Genes (incomplete)::143 of 188
Pseudo Genes (internal stop)::30 of 188
Pseudo Genes (multiple problems)::32 of 188
Pseudo Genes (short protein)::4 of 188
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,558,953
Total ungapped length4,558,953
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000022675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001509.3=NC_012971.2

Assembly statistics

MoleculeTotal
Length
Chromosome 4,558,953

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli BL21(DE3)Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210475.1Escherichia coli ETEC H10407claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210475.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1193.6080.12
Best-match type99.1193.6080.12

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna