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ASM2258v1

Organism name:
Vibrio cholerae MJ-1236 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MJ-1236
BioSample:
SAMN02603569
BioProject:
PRJNA33555
Submitter:
Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)
Date:
2009/05/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000022585.1 (latest)
RefSeq assembly accession:
GCF_000022585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 43528 [UID] 23388 [GenBank] 43528 [RefSeq]

See Genome Information for Vibrio cholerae

There are 3970 assemblies for this organism

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History (Show revision history)

Comment

DNA Source: Rita Colwell (rcolwell@umiacs.umd.edu), Christopher Grim(grim@umd.edu)
Vibrio cholerae MJ-1236, VCD, is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the 'Matlab' variant of El Tor.
Genome coverage: 8x
The NIAID funded Bioinformatics Resource Center PathoSystems Resource ... Integration Center (http://patricbrc.vbi.vt.edu/) is responsible for genome annotation updates of this record.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/17/2020 01:32:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,904
CDSs (total)::3,780
Genes (coding)::3,733
CDSs (with protein)::3,733
Genes (RNA)::124
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::98
ncRNAs::4
Pseudo Genes (total)::47
CDSs (without protein)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::22 of 47
Pseudo Genes (incomplete)::18 of 47
Pseudo Genes (internal stop)::10 of 47
Pseudo Genes (multiple problems)::3 of 47
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,236,368
Total ungapped length4,236,368
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000022595.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP001485.1=NC_012668.1
Chromosome 2CP001486.1=NC_012667.1

Assembly statistics

MoleculeTotal
Length
All4,236,368
Chromosome 13,149,584
Chromosome 21,086,784

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio cholerae MJ-1236Vibrio cholerae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000621645.1Vibrio cholerae ATCC 14035type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000621645.1Vibrio choleraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3291.9896.89
Best-match type99.3291.9896.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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