U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2236v1

Organism name:
Thermococcus gammatolerans EJ3 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: EJ3; DSM 15229
BioSample:
SAMN02603333
BioProject:
PRJNA33671
Submitter:
IGM/ Universit Paris-Sud, France
Date:
2009/06/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000022365.1 (latest)
RefSeq assembly accession:
GCF_000022365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 43308 [UID] 23168 [GenBank] 43308 [RefSeq]

See Genome Information for Thermococcus gammatolerans

History (Show revision history)

Comment

Source DNA and shotgun clones available from Y. Zivanovic, LGA/IGM, Universite Paris-Sud, Orsay, France (yvan.zivanovic@igmors.u-psud.fr.)
Bacteria available as above and from DSMZ under DSM 15229
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can ... be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000022365.1-RS_2024_03_27
Annotation Date::03/27/2024 00:46:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,227
CDSs (total)::2,175
Genes (coding)::2,166
CDSs (with protein)::2,166
Genes (RNA)::52
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::9
CDSs (without protein)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::7 of 9
Pseudo Genes (incomplete)::3 of 9
Pseudo Genes (internal stop)::0 of 9
Pseudo Genes (multiple problems)::1 of 9
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,045,438
Total ungapped length2,045,438
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000022375.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001398.1=NC_012804.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,045,438

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermococcus gammatolerans EJ3Thermococcus gammatolerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000585495.1Thermococcus nautilitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.4740.2441.65

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected