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ASM2222v1

Organism name:
Escherichia coli O157:H7 str. TW14359 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: TW14359
BioSample:
SAMN02604255
BioProject:
PRJNA30045
Submitter:
University of Washington
Date:
2009/07/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000022225.1 (latest)
RefSeq assembly accession:
GCF_000022225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 43188 [UID] 23028 [GenBank] 43188 [RefSeq]

See Genome Information for Escherichia coli

There are 199649 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source DNA is available from Samuel I. Miller, University of Washington, E-mail: millersi@u.washington.edu.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/11/2022 15:06:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,643
CDSs (total)::5,506
Genes (coding)::5,211
CDSs (with protein)::5,211
Genes (RNA)::137
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::107
ncRNAs::8
Pseudo Genes (total)::295
CDSs (without protein)::295
Pseudo Genes (ambiguous residues)::0 of 295
Pseudo Genes (frameshifted)::108 of 295
Pseudo Genes (incomplete)::174 of 295
Pseudo Genes (internal stop)::66 of 295
Pseudo Genes (multiple problems)::43 of 295
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,622,737
Total ungapped length5,622,737
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000022235.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001368.1=NC_013008.1
Plasmid pO157CP001369.1=NC_013010.1

Assembly statistics

MoleculeTotal
Length
All5,622,737
Chromosome 5,528,136
Plasmid pO15794,601

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli O157:H7 str. TW14359Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000734955.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000734955.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0971.4680.68
Best-match type97.0971.4680.68

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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