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ASM2112v1

Organism name:
Escherichia coli O157:H7 str. EC4115 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: EC4115
BioSample:
SAMN02603441
BioProject:
PRJNA27739
Submitter:
J. Craig Venter Institute
Date:
2008/10/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000021125.1 (latest)
RefSeq assembly accession:
GCF_000021125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 42148 [UID] 21928 [GenBank] 42148 [RefSeq]

See Genome Information for Escherichia coli

There are 200514 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/11/2022 15:16:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,747
CDSs (total)::5,609
Genes (coding)::5,308
CDSs (with protein)::5,308
Genes (RNA)::138
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::108
ncRNAs::8
Pseudo Genes (total)::301
CDSs (without protein)::301
Pseudo Genes (ambiguous residues)::0 of 301
Pseudo Genes (frameshifted)::115 of 301
Pseudo Genes (incomplete)::176 of 301
Pseudo Genes (internal stop)::67 of 301
Pseudo Genes (multiple problems)::46 of 301
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,704,171
Total ungapped length5,704,171
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000021135.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001164.1=NC_011353.1
Plasmid pO157CP001163.1=NC_011350.1
Plasmid pEC4115CP001165.1=NC_011351.1

Assembly statistics

MoleculeTotal
Length
All5,704,171
Chromosome 5,572,075
Plasmid pO15794,644
Plasmid pEC411537,452

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli O157:H7 str. EC4115Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000734955.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000734955.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0970.4780.71
Best-match type97.0970.4780.71

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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