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ASM2092v1

Organism name:
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Dublin
Infraspecific name:
Strain: CT_02021853
BioSample:
SAMN02604065
BioProject:
PRJNA19467
Submitter:
TIGR
Date:
2008/09/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000020925.1 (latest)
RefSeq assembly accession:
GCF_000020925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 41948 [UID] 21728 [GenBank] 41948 [RefSeq]

See Genome Information for Salmonella enterica

There are 534994 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The sequenced strain has been deposited at the Salmonella Genetic Stock Center at the University of Calgary under the care ... of Dr. K.E. Sanderson.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/03/2024 11:31:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,844
CDSs (total)::4,726
Genes (coding)::4,508
CDSs (with protein)::4,508
Genes (RNA)::118
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::82
ncRNAs::14
Pseudo Genes (total)::218
CDSs (without protein)::218
Pseudo Genes (ambiguous residues)::0 of 218
Pseudo Genes (frameshifted)::113 of 218
Pseudo Genes (incomplete)::98 of 218
Pseudo Genes (internal stop)::60 of 218
Pseudo Genes (multiple problems)::45 of 218
Pseudo Genes (short protein)::1 of 218
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,917,459
Total ungapped length4,917,459
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000020935.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001144.1=NC_011205.1
Plasmid pCT02021853_74CP001143.1=NC_011204.1

Assembly statistics

MoleculeTotal
Length
All4,917,459
Chromosome 4,842,908
Plasmid pCT02021853_7474,551

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900456445.1Salmonella enterica subsp. entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900456445.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9092.7791.77
Best-match type98.9092.7791.77

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna