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ASM2074v1

Organism name:
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Schwarzengrund
Infraspecific name:
Strain: CVM19633
BioSample:
SAMN02604064
BioProject:
PRJNA19459
Submitter:
TIGR
Date:
2008/07/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000020745.1 (latest)
RefSeq assembly accession:
GCF_000020745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 41788 [UID] 21548 [GenBank] 41788 [RefSeq]

See Genome Information for Salmonella enterica

There are 535031 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The sequenced strain has been deposited at the Salmonella Genetic Stock Center at the University of Calgary under the care ... of Dr. K.E. Sanderson.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000020745.1-RS_2024_03_27
Annotation Date::03/27/2024 01:20:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,743
CDSs (total)::4,623
Genes (coding)::4,470
CDSs (with protein)::4,470
Genes (RNA)::120
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::84
ncRNAs::14
Pseudo Genes (total)::153
CDSs (without protein)::153
Pseudo Genes (ambiguous residues)::0 of 153
Pseudo Genes (frameshifted)::61 of 153
Pseudo Genes (incomplete)::107 of 153
Pseudo Genes (internal stop)::24 of 153
Pseudo Genes (multiple problems)::37 of 153
Pseudo Genes (short protein)::1 of 153
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,823,887
Total ungapped length4,823,887
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000020755.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001127.1=NC_011094.1
Plasmid pCVM19633_110CP001125.1=NC_011092.1
Plasmid pCVM19633_4CP001126.1=NC_011093.1

Assembly statistics

MoleculeTotal
Length
All4,823,887
Chromosome 4,709,075
Plasmid pCVM19633_110110,227
Plasmid pCVM19633_44,585

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001558355.2Salmonella entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001558355.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5090.2987.96
Best-match type98.5090.2987.96

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna