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ASM2024v1

Organism name:
Helicobacter pylori Shi470 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Shi470
BioSample:
SAMN02604319
BioProject:
PRJNA29045
Submitter:
Washington University Medical School
Date:
2008/06/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000020245.1 (latest)
RefSeq assembly accession:
GCF_000020245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 41288 [UID] 21048 [GenBank] 41288 [RefSeq]

See Genome Information for Helicobacter pylori

There are 4493 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/11/2024 01:15:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,560
CDSs (total)::1,515
Genes (coding)::1,435
CDSs (with protein)::1,435
Genes (RNA)::45
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::36
ncRNAs::3
Pseudo Genes (total)::80
CDSs (without protein)::80
Pseudo Genes (ambiguous residues)::0 of 80
Pseudo Genes (frameshifted)::61 of 80
Pseudo Genes (incomplete)::17 of 80
Pseudo Genes (internal stop)::17 of 80
Pseudo Genes (multiple problems)::14 of 80
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,608,548
Total ungapped length1,608,548
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000020255.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001072.2=NC_010698.2

Assembly statistics

MoleculeTotal
Length
Chromosome 1,608,548

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Helicobacter pylori Shi470Helicobacter pylori

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025998455.1Helicobacter pyloritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025998455.1Helicobacter pyloritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.1192.8688.04
Best-match type96.1192.8688.04

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna