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URL -- http://www.jgi.doe.gov
JGI Project ID: 4002732
Source DNA and bacteria available from James Tiedje (tiedjej@msu.edu)
Contacts: James Tiedje (tiedjej@msu.edu)
 David Bruce (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close ... all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2023 10:17:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,428
CDSs (total)::7,342
Genes (coding)::7,224
CDSs (with protein)::7,224
Genes (RNA)::86
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::118
CDSs (without protein)::118
Pseudo Genes (ambiguous residues)::0 of 118
Pseudo Genes (frameshifted)::41 of 118
Pseudo Genes (incomplete)::97 of 118
Pseudo Genes (internal stop)::15 of 118
Pseudo Genes (multiple problems)::30 of 118
##Genome-Annotation-Data-END##

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