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Organism name:
Burkholderia vietnamiensis G4 (b-proteobacteria)
Taxonomy check:
Infraspecific name:
Strain: G4
US DOE Joint Genome Institute
Assembly type:
Assembly level:
Complete Genome
Genome representation:
Excluded from RefSeq:
  • genome length too large
GenBank assembly accession:
GCA_000016205.1 (latest)
RefSeq assembly accession:
GCF_000016205.1 (suppressed)
RefSeq assembly and GenBank assembly identical:

IDs: 37308 [UID] 17008 [GenBank] 37308 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

There are 214 assemblies for this organism

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History (Show revision history)


URL -- http://www.jgi.doe.gov
JGI Project ID: 3436384
Source DNA and bacteria available from James Tiedje (tiedjej@msu.edu)
Contacts: James Tiedje (tiedjej@msu.edu)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close ... all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length8,391,070
Total ungapped length8,391,070
Total number of chromosomes and plasmids8

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000016215.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP000614.1=NC_009256.1
Chromosome 2CP000615.1=NC_009255.1
Chromosome 3CP000616.1=NC_009254.1
Plasmid pBVIE01CP000617.1=NC_009230.1
Plasmid pBVIE02CP000618.1=NC_009227.1
Plasmid pBVIE03CP000619.1=NC_009229.1
Plasmid pBVIE04CP000620.1=NC_009228.1
Plasmid pBVIE05CP000621.1=NC_009226.1

Assembly statistics

Chromosome 13,652,814
Chromosome 22,411,759
Chromosome 31,241,007
Plasmid pBVIE01397,868
Plasmid pBVIE02265,616
Plasmid pBVIE03226,679
Plasmid pBVIE04107,231
Plasmid pBVIE0588,096

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensis G4Burkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000959445.1Burkholderia vietnamiensis LMG 10929type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000959445.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1573.3688.82
Best-match type99.1573.3688.82

ANI result

Taxonomy check statusBest match statusComment