U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1604v1

Organism name:
Salmonella enterica subsp. enterica serovar Newport str. SL254 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Newport
Infraspecific name:
Strain: SL254
BioSample:
SAMN02604062
BioProject:
PRJNA18747
Submitter:
TIGR
Date:
2008/07/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000016045.1 (latest)
RefSeq assembly accession:
GCF_000016045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 37148 [UID] 16848 [GenBank] 37148 [RefSeq]

See Genome Information for Salmonella enterica

There are 534421 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The sequenced strain has been deposited at the Salmonella Genetic Stock Centre at the University of Calgary under the care ... of Dr. K.E. Sanderson.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000016045.1-RS_2024_05_08
Annotation Date::05/08/2024 01:30:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,916
CDSs (total)::4,795
Genes (coding)::4,674
CDSs (with protein)::4,674
Genes (RNA)::121
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::13
Pseudo Genes (total)::121
CDSs (without protein)::121
Pseudo Genes (ambiguous residues)::0 of 121
Pseudo Genes (frameshifted)::47 of 121
Pseudo Genes (incomplete)::90 of 121
Pseudo Genes (internal stop)::20 of 121
Pseudo Genes (multiple problems)::32 of 121
Pseudo Genes (short protein)::1 of 121
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,007,719
Total ungapped length5,007,719
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000016055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001113.1=NC_011080.1
Plasmid pSL254_3CP001112.1=NC_011079.1
Plasmid pSN254CP000604.1=NC_009140.1

Assembly statistics

MoleculeTotal
Length
All5,007,719
Chromosome 4,827,641
Plasmid pSL254_33,605
Plasmid pSN254176,473

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Newport str. SL254Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016028495.1Salmonella entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016028495.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0091.2191.93
Best-match type99.0091.2191.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna