U.S. flag

An official website of the United States government


Send to:

Choose Destination

Download Assembly


Organism name:
Acetivibrio thermocellus ATCC 27405 (firmicutes)
Taxonomy check:
Infraspecific name:
Strain: ATCC 27405
Assembly type:
Assembly level:
Complete Genome
Genome representation:
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000015865.1 (latest)
RefSeq assembly accession:
GCF_000015865.1 (latest)
RefSeq assembly and GenBank assembly identical:

IDs: 36968 [UID] 16668 [GenBank] 36968 [RefSeq]

See Genome Information for Acetivibrio thermocellus

There are 12 assemblies for this organism

See more

History (Show revision history)


URL -- http://www.jgi.doe.gov
JGI Project ID: 2351472
Source DNA and bacteria available from J.H. David Wu (davidwu@che.rochester.edu)
Bacteria available from ATCC: ATCC 27405
Contacts: J.H. David Wu (davidwu@che.rochester.edu)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished ... microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
Additional Note: This is a legacy microbial genome sequencing project. Every attempt has been made to resolve all repetitive sequences and correctly order all unique regions. However, due to the age of this project this was not possible to do in every case.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more


Annotation Provider::NCBI RefSeq
Annotation Date::08/10/2022 01:28:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,402
CDSs (total)::3,330
Genes (coding)::3,268
CDSs (with protein)::3,268
Genes (RNA)::72
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
Pseudo Genes (total)::62
CDSs (without protein)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::23 of 62
Pseudo Genes (incomplete)::40 of 62
Pseudo Genes (internal stop)::26 of 62
Pseudo Genes (multiple problems)::23 of 62
CRISPR Arrays::5

Global statistics

Total sequence length3,843,301
Total ungapped length3,843,301
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000015875.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000568.1=NC_009012.1

Assembly statistics

Chromosome 3,843,301

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acetivibrio thermocellus ATCC 27405Acetivibrio thermocellus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000521465.1Acetivibrio straminisolvenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.6457.0556.11

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
Support Center