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  • Anomalous assembly.
Organism name:
Acidovorax sp. JS42 (b-proteobacteria)
Taxonomy check:
Infraspecific name:
Strain: JS42
DOE Joint Genome Institute
Assembly type:
Assembly level:
Complete Genome
Genome representation:
Assembly anomaly:
contaminated, unverified source organism
Excluded from RefSeq:
  • contaminated
  • unverified source organism
GenBank assembly accession:
GCA_000015545.1 (latest)
RefSeq assembly accession:
GCF_000015545.1 (suppressed)
RefSeq assembly and GenBank assembly identical:

IDs: 36648 [UID] 16348 [GenBank] 36648 [RefSeq]

See Genome Information for Acidovorax sp. JS42

History (Show revision history)


URL -- http://www.jgi.doe.gov
JGI Project ID: 4001426
Source DNA and bacteria available from David Stahl (dastahl@u.washington.edu)
Contacts: David Stahl (dastahl@u.washington.edu)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close ... all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length4,585,154
Total ungapped length4,585,154
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000015555.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000539.1=NC_008782.1
Plasmid pAOVO01CP000540.1=NC_008765.1
Plasmid pAOVO02CP000541.1=NC_008766.1

Assembly statistics

Chromosome 4,448,856
Plasmid pAOVO0172,689
Plasmid pAOVO0263,609

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acidovorax sp. JS42Acidovorax sp. JS42

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002214645.1Diaphorobacter nitroreducenssyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.8670.1379.17

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type 'syntype' is not safe
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