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URL -- http://www.jgi.doe.gov
JGI Project ID: 2773192
Source DNA and bacteria available from Gary Andersen (glandersen@lbl.gov)
Contacts: Gary Andersen (glandersen@lbl.gov)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by JGI-ORNL
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with greater than 98% ... coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/13/2022 01:41:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,204
CDSs (total)::4,100
Genes (coding)::3,913
CDSs (with protein)::3,913
Genes (RNA)::104
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::71
ncRNAs::11
Pseudo Genes (total)::187
CDSs (without protein)::187
Pseudo Genes (ambiguous residues)::0 of 187
Pseudo Genes (frameshifted)::83 of 187
Pseudo Genes (incomplete)::118 of 187
Pseudo Genes (internal stop)::27 of 187
Pseudo Genes (multiple problems)::31 of 187
CRISPR Arrays::1
##Genome-Annotation-Data-END##

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