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Organism name:
Pseudomonas fluorescens Pf0-1 (g-proteobacteria)
Taxonomy check:
Infraspecific name:
Strain: Pf0-1
DOE Joint Genome Institute
Assembly type:
Assembly level:
Complete Genome
Genome representation:
GenBank assembly accession:
GCA_000012445.1 (latest)
RefSeq assembly accession:
GCF_000012445.1 (latest)
RefSeq assembly and GenBank assembly identical:

IDs: 33548 [UID] 13248 [GenBank] 33548 [RefSeq]

See Genome Information for Pseudomonas fluorescens

There are 304 assemblies for this organism

See more

History (Show revision history)


URL -- http://www.jgi.doe.gov
JGI Projec ID: 2351488
Source DNA and bacteria available from Mark Silby (mark.silby@tufts.edu)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have ... been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more


Annotation Provider::NCBI RefSeq
Annotation Date::02/22/2023 13:59:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,873
CDSs (total)::5,777
Genes (coding)::5,718
CDSs (with protein)::5,718
Genes (RNA)::96
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
Pseudo Genes (total)::59
CDSs (without protein)::59
Pseudo Genes (ambiguous residues)::0 of 59
Pseudo Genes (frameshifted)::21 of 59
Pseudo Genes (incomplete)::45 of 59
Pseudo Genes (internal stop)::8 of 59
Pseudo Genes (multiple problems)::10 of 59

Global statistics

Total sequence length6,438,405
Total ungapped length6,438,405
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000012455.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000094.2=NC_007492.2

Assembly statistics

Chromosome 6,438,405

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas fluorescens Pf0-1Pseudomonas fluorescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003417575.1Pseudomonas fluorescenssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001594225.2Pseudomonas glycinaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.1639.0739.02
Best-match type95.9286.3986.95

ANI result

Taxonomy check statusBest match statusComment