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ASM1206v2

Organism name:
Borrelia hermsii DAH (spirochetes)
Taxonomy check:
OK
Infraspecific name:
Strain: DAH
BioSample:
SAMN02641559
BioProject:
PRJNA29637
Submitter:
Rocky Mountain Laboratories, NIAID, NIH
Date:
2012/05/10
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000012065.2 (latest)
RefSeq assembly accession:
GCF_000012065.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 502178 [UID] 502108 [GenBank] 502178 [RefSeq]

See Genome Information for Borrelia hermsii

There are 9 assemblies for this organism

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History (Show revision history)

Comment

genome lacks 5' telomeric end

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/10/2021 10:18:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,024
CDSs (total)::986
Genes (coding)::932
CDSs (with protein)::932
Genes (RNA)::38
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::32
ncRNAs::3
Pseudo Genes (total)::54
CDSs (without protein)::54
Pseudo Genes (ambiguous residues)::0 of 54
Pseudo Genes (frameshifted)::44 of 54
Pseudo Genes (incomplete)::12 of 54
Pseudo Genes (internal stop)::18 of 54
Pseudo Genes (multiple problems)::20 of 54
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,066,225
Total ungapped length1,066,225
Gaps between scaffolds0
Number of scaffolds11
Scaffold N50922,307
Scaffold L501
Number of contigs11
Contig N50922,307
Contig L501
Total number of chromosomes and plasmids3
Number of component sequences (WGS or clone)11

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000012075.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome CP000048.1=NC_010673.10
Plasmid unnamedn/an/an/a9
Plasmid lp53n/an/an/a1

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule1,066,225111,066,225922,30700
Chromosome Assembled molecule922,3071922,307922,30700
Plasmid unnamedAllAssembled moleculeUnlocalized scaffolds138,5560138,556909138,5560138,55616,853016,853000000
Plasmid lp53AllAssembled moleculeUnlocalized scaffolds5,36205,3621015,36205,3625,36205,362000000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Borrelia hermsii DAHBorrelia hermsii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001660005.1Borrelia hermsii HS1suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001660005.1Borrelia hermsiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9799.1176.02
Best-match type99.9799.1176.02

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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