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ASM1074v1

Organism name:
Escherichia coli O103:H2 str. 12009 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 12009
BioSample:
SAMD00060956
BioProject:
PRJDA32511
Submitter:
University of Tokyo, Graduate School of Frontier Sciences
Date:
2009/09/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000010745.1 (latest)
RefSeq assembly accession:
GCF_000010745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 104028 [UID] 11548 [GenBank] 104028 [RefSeq]

See Genome Information for Escherichia coli

There are 198283 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/11/2022 14:43:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,541
CDSs (total)::5,413
Genes (coding)::5,131
CDSs (with protein)::5,131
Genes (RNA)::128
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::98
ncRNAs::8
Pseudo Genes (total)::282
CDSs (without protein)::282
Pseudo Genes (ambiguous residues)::0 of 282
Pseudo Genes (frameshifted)::110 of 282
Pseudo Genes (incomplete)::157 of 282
Pseudo Genes (internal stop)::67 of 282
Pseudo Genes (multiple problems)::46 of 282
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,524,860
Total ungapped length5,524,860
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000010755.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP010958.1=NC_013353.1
Plasmid pO103AP010959.1=NC_013354.1

Assembly statistics

MoleculeTotal
Length
All5,524,860
Chromosome 5,449,314
Plasmid pO10375,546

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli O103:H2 str. 12009Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000734955.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000734955.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1173.8481.91
Best-match type97.1173.8481.91

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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