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ASM1002v1

Organism name:
Xanthomonas oryzae pv. oryzae MAFF 311018 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MAFF 311018
BioSample:
SAMD00061078
BioProject:
PRJNA16297
Submitter:
National Institute of Agrobiological Sciences
Date:
2006/01/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000010025.1 (latest)
RefSeq assembly accession:
GCF_000010025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 31528 [UID] 10828 [GenBank] 31528 [RefSeq]

See Genome Information for Xanthomonas oryzae

There are 529 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000010025.1-RS_2024_05_05
Annotation Date::05/05/2024 13:25:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,659
CDSs (total)::4,453
Genes (coding)::3,688
CDSs (with protein)::3,688
Genes (RNA)::206
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::53
ncRNAs::147
Pseudo Genes (total)::765
CDSs (without protein)::765
Pseudo Genes (ambiguous residues)::0 of 765
Pseudo Genes (frameshifted)::360 of 765
Pseudo Genes (incomplete)::460 of 765
Pseudo Genes (internal stop)::175 of 765
Pseudo Genes (multiple problems)::211 of 765
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,940,217
Total ungapped length4,940,217
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000010035.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP008229.1=NC_007705.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,940,217

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xanthomonas oryzae pv. oryzae MAFF 311018Xanthomonas oryzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004136375.1Xanthomonas oryzae pv. oryzaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004136375.1Xanthomonas oryzaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5594.5893.62
Best-match type99.5594.5893.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna