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ASM976v2

Organism name:
Streptomyces avermitilis MA-4680 = NBRC 14893 (high GC Gram+)
Taxonomy check:
OK
Infraspecific name:
Strain: MA-4680
BioSample:
SAMD00061088
BioProject:
PRJNA189
Submitter:
NITE
Date:
2016/03/24
Assembly type:
na
Release type:
minor
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000009765.2 (latest)
RefSeq assembly accession:
GCF_000009765.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 709531 [UID] 3140618 [GenBank] 3192468 [RefSeq]

See Genome Information for Streptomyces avermitilis

There are 8 assemblies for this organism

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History (Show revision history)

Comment

This work was done in collaboration with Haruo Ikeda(*1), Jun Ishikawa(*2), Akiharu Hanamoto(*3), Chigusa Takahashi(*3), Mayumi Shinose(*3), Hiroshi Horikawa(*4), Hidekazu Nakazawa(*4), Tomomi Osonoe(*4), Norihiro Kushida(*4), Hisashi Kikuchi(*4), Tadayoshi Shiba(*5), Yoshiyuki Sakaki(*6,*7), Masahira Hattori(*1,*7)
and Satoshi Omura(*1,*3).
Final finishing process and all ... annotation were done by H. Ikeda and J. Ishikawa.
*1 Kitasato Institute for Life Sciences, Kitasato University *2 National Institute of Infectious Diseases
*3 The Kitasato Institute
*4 National Institute of Technology and Evaluation *5 School of Science, Kitasato University
*6 Institute of Medical Science, University of Tokyo *7 RIKEN, Genomic Sciences Center
All the annotated genes identified are available from following urls.
http://avermitilis.ls.kitasato-u.ac.jp  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/13/2020 20:14:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,944
CDSs (total)::7,846
Genes (coding)::7,514
CDSs (with protein)::7,514
Genes (RNA)::98
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::77
ncRNAs::3
Pseudo Genes (total)::332
CDSs (without protein)::332
Pseudo Genes (ambiguous residues)::0 of 332
Pseudo Genes (frameshifted)::140 of 332
Pseudo Genes (incomplete)::219 of 332
Pseudo Genes (internal stop)::30 of 332
Pseudo Genes (multiple problems)::52 of 332
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,119,895
Total ungapped length9,119,895
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000009775.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome BA000030.4=NC_003155.5
Plasmid SAP1AP005645.1=NC_004719.1

Assembly statistics

MoleculeTotal
Length
All9,119,895
Chromosome 9,025,608
Plasmid SAP194,287

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces avermitilis MA-4680 = NBRC 14893Streptomyces avermitilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000764715.1Streptomyces avermitilis MA-4680 = NBRC 14893type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000764715.1Streptomyces avermitilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.3586.92
Best-match type99.9899.3586.92

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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