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ASM950v1

Organism name:
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Enteritidis
Infraspecific name:
Strain: P125109
BioSample:
SAMEA1705941
BioProject:
PRJEA30687
Submitter:
Wellcome Trust Sanger Institute
Date:
2008/09/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000009505.1 (latest)
RefSeq assembly accession:
GCF_000009505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 31048 [UID] 10308 [GenBank] 31048 [RefSeq]

See Genome Information for Salmonella enterica

There are 534994 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 00:51:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,552
CDSs (total)::4,432
Genes (coding)::4,281
CDSs (with protein)::4,281
Genes (RNA)::120
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::83
ncRNAs::15
Pseudo Genes (total)::151
CDSs (without protein)::151
Pseudo Genes (ambiguous residues)::0 of 151
Pseudo Genes (frameshifted)::65 of 151
Pseudo Genes (incomplete)::100 of 151
Pseudo Genes (internal stop)::34 of 151
Pseudo Genes (multiple problems)::42 of 151
Pseudo Genes (short protein)::1 of 151
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,685,848
Total ungapped length4,685,848
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000009515.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AM933172.1=NC_011294.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,685,848

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016028495.1Salmonella entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016028495.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9895.2789.84
Best-match type98.9895.2789.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna