U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM940v1

Organism name:
Staphylococcus carnosus subsp. carnosus TM300 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TM300
BioSample:
SAMEA2272563
BioProject:
PRJEA34811
Submitter:
Competence Network PathoGenoMik
Date:
2009/02/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000009405.1 (latest)
RefSeq assembly accession:
GCF_000009405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 30948 [UID] 10208 [GenBank] 30948 [RefSeq]

See Genome Information for Staphylococcus carnosus

There are 23 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Clone requests: ralf.rosenstein@uni-tuebingen.de

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2022 00:55:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,527
CDSs (total)::2,447
Genes (coding)::2,387
CDSs (with protein)::2,387
Genes (RNA)::80
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::30 of 60
Pseudo Genes (incomplete)::7 of 60
Pseudo Genes (internal stop)::25 of 60
Pseudo Genes (multiple problems)::2 of 60
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,566,424
Total ungapped length2,566,424
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000009415.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AM295250.1=NC_012121.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,566,424

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus carnosus subsp. carnosus TM300Staphylococcus carnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900458435.1Staphylococcus carnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900458435.1Staphylococcus carnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9999.58
Best-match type99.9999.9999.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center