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ASM912v1

Organism name:
Ralstonia solanacearum GMI1000 (b-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: GMI1000
BioSample:
SAMEA3138192
BioProject:
PRJNA13
Submitter:
Genoscope
Date:
2003/05/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000009125.1 (latest)
RefSeq assembly accession:
GCF_000009125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 30668 [UID] 9928 [GenBank] 30668 [RefSeq]

See Genome Information for Ralstonia solanacearum

There are 477 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
http://bioinfo.genopole-toulouse.prd.fr/annotation/iANT/bacteria/ralsto

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/25/2022 23:42:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,191
CDSs (total)::5,116
Genes (coding)::4,987
CDSs (with protein)::4,987
Genes (RNA)::75
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::129
CDSs (without protein)::129
Pseudo Genes (ambiguous residues)::0 of 129
Pseudo Genes (frameshifted)::54 of 129
Pseudo Genes (incomplete)::100 of 129
Pseudo Genes (internal stop)::8 of 129
Pseudo Genes (multiple problems)::33 of 129
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,810,922
Total ungapped length5,810,922
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000009135.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AL646052.1=NC_003295.1
Plasmid pGMI1000MPAL646053.1=NC_003296.1

Assembly statistics

MoleculeTotal
Length
All5,810,922
Chromosome 3,716,413
Plasmid pGMI1000MP2,094,509

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ralstonia solanacearum GMI1000Ralstonia solanacearum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_015910705.1Ralstonia solanacearumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_919586305.1Ralstonia pseudosolanacearumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.3072.3774.39
Best-match type96.0579.4584.90

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%
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