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ASM906v1

Organism name:
Yersinia pestis CO92 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CO92
BioSample:
SAMEA1705942
BioProject:
PRJNA34
Submitter:
Sanger Institute
Date:
2003/05/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000009065.1 (latest)
RefSeq assembly accession:
GCF_000009065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 30608 [UID] 9868 [GenBank] 30608 [RefSeq]

See Genome Information for Yersinia pestis

There are 685 assemblies for this organism

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History (Show revision history)

Comment

Notes:
Details of Y. pestis sequencing at the Sanger Centre are available on the World Wide Web.
(URL, http://www.sanger.ac.uk/Projects/Y_pestis/)

Original CON assembly
join(AJ414141.1:1..288050,AJ414142.1:51..214050,AJ414143.1:51..201050, AJ414144.1:51..208050,AJ414145.1:51..208050,AJ414146.1:51..210050, AJ414147.1:51..199050,AJ414148.1:51..210050,AJ414149.1:51..193050, AJ414150.1:51..335050,AJ414151.1:51..334050,AJ414152.1:51..313050, AJ414153.1:51..258050,AJ414154.1:51..204050,AJ414155.1:51..205050, AJ414156.1:51..220050,AJ414157.1:51..216040,AJ414158.1:41..235050, AJ414159.1:51..199050,AJ414160.1:51..203728)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP ... can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2022 01:16:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,401
CDSs (total)::4,301
Genes (coding)::4,108
CDSs (with protein)::4,108
Genes (RNA)::100
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::12
Pseudo Genes (total)::193
CDSs (without protein)::193
Pseudo Genes (ambiguous residues)::0 of 193
Pseudo Genes (frameshifted)::81 of 193
Pseudo Genes (incomplete)::134 of 193
Pseudo Genes (internal stop)::25 of 193
Pseudo Genes (multiple problems)::39 of 193
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,829,855
Total ungapped length4,829,855
Total number of chromosomes and plasmids4

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000009075.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AL590842.1=NC_003143.1
Plasmid pCD1AL117189.1=NC_003131.1
Plasmid pMT1AL117211.1=NC_003134.1
Plasmid pPCP1AL109969.1=NC_003132.1

Assembly statistics

MoleculeTotal
Length
All4,829,855
Chromosome 4,653,728
Plasmid pCD170,305
Plasmid pMT196,210
Plasmid pPCP19,612

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia pestis CO92Yersinia pestis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900460465.1Yersinia pestissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900460465.1Yersinia pestissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9997.6598.73
Best-match type99.9997.6598.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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