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ASM666v1

Organism name:
Escherichia coli O157:H7 str. EDL933 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: EDL933
BioSample:
SAMN02604092
BioProject:
PRJNA259
Submitter:
Univ. Wisconsin
Date:
2004/12/06
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000006665.1 (latest)
RefSeq assembly accession:
GCF_000006665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 28248 [UID] 7468 [GenBank] 28248 [RefSeq]

See Genome Information for Escherichia coli

There are 200438 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/11/2022 14:56:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,594
CDSs (total)::5,464
Genes (coding)::5,112
CDSs (with protein)::5,112
Genes (RNA)::130
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::100
ncRNAs::8
Pseudo Genes (total)::352
CDSs (without protein)::352
Pseudo Genes (ambiguous residues)::0 of 352
Pseudo Genes (frameshifted)::168 of 352
Pseudo Genes (incomplete)::170 of 352
Pseudo Genes (internal stop)::74 of 352
Pseudo Genes (multiple problems)::50 of 352
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,620,522
Total ungapped length5,616,521
Gaps between scaffolds0
Number of scaffolds2
Scaffold N505,528,445
Scaffold L501
Number of contigs3
Contig N503,798,696
Contig L501
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000006675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AE005174.2=NC_002655.2
Plasmid pO157AF074613.1=NC_007414.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All5,620,52225,616,5215,528,44510
Chromosome 5,528,44515,524,4445,528,44510
Plasmid pO15792,077192,07792,07700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli O157:H7 str. EDL933Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000734955.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000734955.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0671.1380.21
Best-match type97.0671.1380.21

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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