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ASM666v1

Organism name:: Escherichia coli O157:H7 str. EDL933 (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: EDL933
BioSample:: SAMN02604092
BioProject:: PRJNA259
Submitter:: Univ. Wisconsin
Date:: 2004/12/06
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000006665.1 (latest)
RefSeq assembly accession:: GCF_000006665.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 28248 [UID] 7468 [GenBank] 28248 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 200438 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000006665.1	=	GCF_000006665.1	ASM666v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::04/11/2022 14:56:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,594
CDSs (total)::5,464
Genes (coding)::5,112
CDSs (with protein)::5,112
Genes (RNA)::130
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::100
ncRNAs::8
Pseudo Genes (total)::352
CDSs (without protein)::352
Pseudo Genes (ambiguous residues)::0 of 352
Pseudo Genes (frameshifted)::168 of 352
Pseudo Genes (incomplete)::170 of 352
Pseudo Genes (internal stop)::74 of 352
Pseudo Genes (multiple problems)::50 of 352
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,620,522
Total ungapped length	5,616,521
Gaps between scaffolds	0
Number of scaffolds	2
Scaffold N50	5,528,445
Scaffold L50	1
Number of contigs	3
Contig N50	3,798,696
Contig L50	1
Total number of chromosomes and plasmids	2
Number of component sequences (WGS or clone)	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AE005174.2	=	NC_002655.2
Plasmid pO157	AF074613.1	=	NC_007414.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	5,620,522	2	5,616,521	5,528,445	1
Chromosome	5,528,445	1	5,524,444	5,528,445	1
Plasmid pO157	92,077	1	92,077	92,077	0

	ANI	Query coverage	Subject coverage
Declared type	97.06	71.13	80.21
Best-match type	97.06	71.13	80.21

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ASM666v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 200438 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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