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AgamP3

Organism name:
Anopheles gambiae str. PEST (African malaria mosquito)
Infraspecific name:
Strain: PEST
BioSample:
SAMN02952903
Submitter:
The International Consortium for the Sequencing of Anopheles Genome
Date:
2006/10/16
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000005575.1 (latest)
RefSeq assembly accession:
GCF_000005575.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
AAAB01

IDs: 305108 [UID] 304838 [GenBank] 305108 [RefSeq]

See Genome Information for Anopheles gambiae

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Accessions AAAB01000001-AAAB01008987 constitute the genome assembly.
Some scaffolds are now marked in the Definition line as probably representing either contaminating bacterial DNA or alternative assemblies of a region also present in another larger scaffold; they have no annotation of gene ... features.
Accessions AAB01008988-AAAB01069724 are additional short contigs that we were unwilling to designate as unique in the genome and are unable to place within a larger scaffold in the assembly process. This happens because they may be repetitive, and we are very cautious about placing them incorrectly; and/or because they have very few Celera mate pairs to allow us to place them with confidence.
Strings of n's in a record represent gaps between contigs within a scaffold, and the length of each string corresponds to the approximate length of the gap.
VectorBase (www.vectorbase.org), a NIAID Bioinformatics Resource Center, is responsible for the assembled genome sequence and its annotation. For more information, contact info@vectorbase.org.

Annotation was updated on the contigs in May 2011.  more

Global statistics

Total sequence length265,027,044
Total assembly gap length12,572,948
Gaps between scaffolds55
Number of scaffolds8,145
Scaffold N5012,309,988
Scaffold L509
Number of contigs16,825
Contig N5085,548
Contig L50696
Total number of chromosomes and plasmids7

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000005585.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM000360.1=NC_004818.20
Chromosome 2RCM000357.1=NT_078266.20
Chromosome 3RCM000359.1=NT_078268.40
Chromosome Yn/an/an/a55
Chromosome 2LCM000356.1=NT_078265.20
Chromosome 3LCM000358.1=NT_078267.50
unplacedn/an/an/a8,029

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome XAssembled molecule24,393,1081323,385,3493,715,0791,27512
Chromosome 2RAssembled molecule61,545,1051660,132,45310,831,4511,64315
Chromosome 3RAssembled molecule53,200,684652,226,56818,711,4321,1235
Chromosome YAllAssembled moleculeUnlocalized scaffolds183,0450183,04555055135,1550135,15511,068011,068909000
Chromosome 2LAssembled molecule49,364,3251248,525,74712,309,98894611
Chromosome 3LAssembled molecule41,963,4351340,758,47312,698,2471,26012
unplacedAssembled molecule34,361,9798,02927,274,98812,7122,4240
MoleculeTotal
Length
Mitochondrion MT15,363
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